> For the complete documentation index, see [llms.txt](https://rotsl.gitbook.io/rotsl/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://rotsl.gitbook.io/rotsl/projects.md).

# Projects

I organize these projects around research automation, UI systems, context tooling, biological imaging, developer infrastructure, models, and AI research systems.

![Animated project flow](/files/n6mjViYQig5eRdfiM4CI)

## Project map

```mermaid
flowchart LR
    Projects[Projects]
    Projects --> ResearchAutomation[Research Automation]
    Projects --> BioImaging[Bio Imaging]
    Projects --> ContextSystems[Context Systems]
    Projects --> WebUI[Web and UI]
    Projects --> DevTools[Developer Tools]
    Projects --> ResearchSystems[Research Systems]
    ResearchAutomation --> Automator
    ResearchAutomation --> EDGAR
    ResearchAutomation --> BiologyAutomation[Automation in Biology]
    BioImaging --> grayleafspotr
    BioImaging --> metricsPetri[metrics-petri]
    BioImaging --> HFModels[Hugging Face models]
    ContextSystems --> ContextFusion
    ContextSystems --> CFAdv
    ContextSystems --> ContextFission
    ContextSystems --> Hypercontext
    WebUI --> Wisp
    WebUI --> Weave
    WebUI --> PotOf[pot.of]
    DevTools --> envguard
    DevTools --> Rex[REX Framework]
    DevTools --> UPE[Ulysses Prediction Engine]
    ResearchSystems --> CIA
    ResearchSystems --> SMGP
    ResearchSystems --> NexusRT
    ResearchSystems --> EdgeCompiler
```

## Project groups

[![Automator](https://img.shields.io/badge/Open-Automator-2f80ed?style=for-the-badge)](/rotsl/projects/automator.md)

[![Web and Context Tools](https://img.shields.io/badge/Open-Web%20and%20Context%20Tools-9b51e0?style=for-the-badge)](/rotsl/projects/web-and-context-tools.md)

[![Developer Tools](https://img.shields.io/badge/Open-Developer%20Tools-111827?style=for-the-badge)](/rotsl/projects/developer-tools.md)

[![Bio Imaging](https://img.shields.io/badge/Open-Bio%20Imaging-0f766e?style=for-the-badge)](/rotsl/projects/bio-imaging.md)

[![Models](https://img.shields.io/badge/Open-Models-f2994a?style=for-the-badge)](/rotsl/projects/models.md)

[![GitHub Apps and Actions](https://img.shields.io/badge/Open-GitHub%20Apps%20and%20Actions-24292f?style=for-the-badge\&logo=github)](/rotsl/projects/github-apps-and-actions.md)

[![Research Systems](https://img.shields.io/badge/Open-Research%20Systems-b91c1c?style=for-the-badge)](/rotsl/projects/research-systems.md)